数据库名称：BrassicaTED
数据库简述：Brassica Tranposable Elements Database
所属国家/地区：Korea, Republic of
数据库主要信息：BrassicaTED (Brassica Tranposable Elements Database), is a newly developed database of information regarding the characteristics and potential utility of mTEs including MITE, TRIM and SINEs in B. rapa and B. oleracea. BrassicaTED has datasets for 41 mTE families, including 5894 and 6026 members from 20 MITE families, 1393 and 1639 members from 5 TRIM families, 1270 and 2364 members from 16 SINE families in B. rapa and B. oleracea, respectively. BrassicaTED offers different sections in which to browse structural and positional characteristics for every mTE family. In addition, we have added data on 289 MITE insertion polymorphisms from a survey of seven Brassica relatives. Genes with internal mTE insertions are shown with detailed gene annotation and microarray-based comparative gene expression data in comparison with their paralogs in the triplicated B. rapa genome. This database also includes a novel tool, K BLAST (Karyotype BLAST), for clear visualization of the locations for each member in the B. rapa and B. oleracea pseudo-genome sequences.
建立年份：2014
联系信息：Contact information
University/Institution:
Seoul National University
Address:
Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute for Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea
City:
Province/State:
Country/Region:
Korea, Republic of
Contact name (PI/Team):
Yang TJ
Contact email (PI/Helpdesk):
tjyang@snu.ac.kr.
