数据库名称：DLGP
数据库简述：A database for lineage-conserved and lineage-specific gene pairs
所属国家/地区：China
数据库主要信息：DLGP stores the pre-calculated lineage-based gene pairs in currently available 134 animal and plant genomes and inspect them under the same analytical framework, bringing out a set of innovational features. First, the taxonomy or lineage has been classified into four levels such as Kingdom, Phylum, Class and Order. It adopts all-to-all comparison strategy to identify the possible conserved gene pairs in all species for each gene pair in certain species and reckon those that are conserved in over a significant proportion of species in a given lineage (e.g. Primates, Diptera or Poales) as the lineage-conserved gene pairs. Furthermore, it predicts the lineage-specific gene pairs by retaining the above-mentioned lineage-conserved gene pairs that are not conserved in any other lineages. Second, it carries out pairwise comparison for the gene pairs between two compared species and creates the table including all the conserved gene pairs and the image elucidating the conservation degree of gene pairs in chromosomal level. Third, it supplies gene order browser to extend gene pairs to gene clusters, allowing users to view the evolution dynamics in the gene context in an intuitive manner. This database will be able to facilitate the particular comparison between animals and plants, between vertebrates and arthropods, and between monocots and eudicots, accounting for the significant contribution of gene pairs to speciation and diversification in specific lineages..
建立年份：2016
联系信息：Contact information
University/Institution:
Beijing Institute of Genomics, Chinese Academy of Sciences
Address:
Stem Cell Laboratory, UCL Cancer Institute, University College London, London WC1E 6BT, UK; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, PR China.
City:
Beijing
Province/State:
Beijing
Country/Region:
China
Contact name (PI/Team):
Wang D
Contact email (PI/Helpdesk):
dapeng.wang@ucl.ac.uk
