数据库名称：TSTD
数据库简述：Tomato Symbiotic Transcriptome Database
所属国家/地区：China
数据库主要信息：The annotation of the tomato genome was improved by a multiple-platform sequencing strategy. A total of 3,174 protein-coding genes were upregulated during AMS, 42% of which were alternatively spliced. Comparative-transcriptome analysis revealed that genes from 24 orthogroups were consistently induced by AMS in eight phylogenetically distant angiosperms. Seven additional orthogroups were specifically induced by AMS in all surveyed dicot AMS host plants. However, these orthogroups were absent or not induced in monocots and/or non-AMS hosts, suggesting a continuously evolving AMS-responsive network in addition to a conserved core regulatory module. Additionally, we detected 587 lncRNAs, ten miRNAs, and 146 circRNAs that responded to AMS, which were incorporated to establish a tomato AMS-responsive, competing RNA-responsive endogenous RNA (ceRNA) network.
建立年份：2023
联系信息：Contact information
University/Institution:
Nanjing University
Address:
State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210023, China.
City:
Nanjing
Province/State:
Country/Region:
China
Contact name (PI/Team):
Zhu-Qing Shao
Contact email (PI/Helpdesk):
zhuqingshao@nju.edu.cn
